Sequencing

Efficient, high-performance solutions for next-generation sequencing (NGS).


Charting future paths for sequencing through trusted innovation, expertise, and partnership

Solution

Comprehensive NGS solutions for research and beyond

Next-generation sequencing (NGS) is an indispensable tool, yet the ever-expanding universe of sample types, applications, and technologies make selecting the best sequencing protocol a challenge. 

Roche empowers every step of your workflow with a comprehensive NGS portfolio, allowing you to discover, understand, and act with confidence:

  • Efficient sample prep: High-performance KAPA library preparation and target enrichment solutions.
  • Walk-away automation: Decades of pre-analytical expertise with the AVENIO Edge System.*
  • Actionable insights: Confident comprehensive genomic profiling with AVENIO Tumor Tissue CGP assays.
  • Transformative scale: Unprecedented speed and flexibility via the AXELIOS 1 platform.

Roche offers a comprehensive portfolio of NGS solutions to meet your research needs, irrespective of the size of your sample cohort or genomic regions of interest. Our versatile, high-performance KAPA library preparation solutions enable a wide variety of research applications, including whole-genome sequencing (WGS), whole-exome sequencing (WES), whole transcriptome sequencing (WTS), and methylation profiling. Targeted DNA and RNA sequencing is supported with expertly designed catalog and custom KAPA target enrichment panels and chemistries. Additionally, oncology research is enabled through integrated, fully optimized AVENIO comprehensive genomic profiling (CGP) and oncology assays. Our fully walk-away AVENIO Edge System* brings decades of pre-analytical Roche automation experience to NGS laboratories. 

We enable accurate data analysis for our CGP and oncology assays with intuitive, cloud-based software solutions, such as the FoundationOne® Analysis Platform and AVENIO Oncology Analysis Software. Secondary analysis and visualization of target enrichment data generated with KAPA panels are offered through third-party partnerships. High-confidence variant calls are easily converted to actionable biological insights and comprehensible reports with our navify® Mutation Profiler** or a tertiary analysis platform of your choice.

We are developing the latest addition to our comprehensive NGS portfolio, the transformative AXELIOS 1 platform. Based on Roche’s innovative sequencing by expansion (SBX) technology, the AXELIOS 1 platform is a highly flexible Research Use Only (RUO) sequencing platform that delivers accurate, cost-effective sequencing across a wide range of research applications at unprecedented scale and speed.

With proven expertise and innovative sequencing solutions, Roche supports every step of your NGS workflow, allowing you to discover, understand, and act with confidence.

 

Value

Reliable, high-performance products designed to meet your needs

Roche Diagnostics is built on a proud history of innovation and scientific expertise across molecular, pathology, core lab, and near patient care. Our sequencing solutions complement this portfolio, offering outstanding and reliable performance and streamlined workflow.

Our sequencing products, like the KAPA portfolio of library prep and target enrichment solutions, the AVENIO Edge System,* and navify Mutation Profiler** offer the flexibility needed for NGS workflows, whereas end-to-end AVENIO Tumor Tissue CGP and oncology assays are carefully optimized for easy implementation in labs with limited NGS experience.

The transformative AXELIOS 1 platform is designed to provide accuracy and speed required for rapid-turnaround and deep coverage that can support research applications, yet offers the flexibility and cost-effectiveness  to support data-intensive emerging research applications such as single-cell genomics and spatial transcriptomics.

Our product design is informed by extensive product development experience, scientific collaborations, and a deep understanding of laboratory operations. Insights gained from serving a diverse, global customer base ensure that products are engineered to meet specific needs across a broad range of sample types, applications, and laboratory settings. State-of-the-art manufacturing facilities on multiple continents release products to rigorous quality standards, ensuring a robust and reliable supply chain.

Vision

Building an innovative, accessible, and sustainable future for genomic medicine

At Roche, we combine decades of expertise in diagnostics and drug development to relentlessly advance science and address the most complex challenges in healthcare. We recognise NGS as a crucial technology that has the potential to augment our diagnostic portfolio, enabling us to continue our mission of improving lives through innovative solutions.

A commitment to transform the sequencing landscape is further realized through the addition of SBX technology to our portfolio. With high accuracy, speed, scalability, and flexibility, SBX promises to revolutionize the research application of NGS in oncology, genetics, complex and infectious diseases. Over time, we will integrate SBX with our existing tools and cutting-edge chemistries. Our goal is to offer the full breadth and depth of Roche’s technical expertise, consistent product quality, reliability, and customer-centric support, across the entire sequencing workflow, from sample to report.

We are committed to innovations in NGS, leveraging the portfolio to bring end-to-end solutions that can accelerate applications in research, diagnostics, drug discovery and development, companion diagnostics, and other areas in the future. Our goal is to further develop personalized healthcare—both within Roche and also via partnerships with leading sequencing labs and pharmaceutical companies globally.

Prepare high-quality libraries for efficient next-generation sequencing.

Efficient NGS target enrichment with Roche’s KAPA HyperCap and KAPA HyperPETE workflows—flexible solutions for focused or broad panels, and custom designs.

Optimize library quality and laboratory resources with automated sample prep.

AVENIO Edge System is a fully automated IVD liquid handler for end-to-end library preparation, target enrichment, quantification, normalization, and pooling.
Intuitive, templated design software for rapid and flexible user-defined workflow deployment.Easy-to-use interface has tunable parametersUnparalleled flexibility allows changing workflows at any time during the runWorkflows can be configured to stop or start at any stepValidated workflows are pre-populated with recommended parameters and the ability to adjust if needed

Convert sequencing data to meaningful insights with confidence and ease.

The FoundationOne® Analysis Platform enables the end-to-end workflow from sample extraction to data analysis. The software is for research use only. The FoundationOne® Analysis Platform allows labs to quickly and easily transform data from enriched DNA processed on an Illumina NextSeq into meaningful insights for comprehensive genomic profiling.The FoundationOne® Analysis Platform is a cloud-based software that processes the sequencing data from the NextSeq instruments, and produces files with filtered variant calls and QC metrics which are made available to through AVENIO Connect Software.The AVENIO Connect Software is a cloud solution and the user interface for the FoundationOne® Analysis Platform. The AVENIO Connect Software is used to manage analyses, view sample results, and download results output files. The AVENIO Connect Software is configured to on-premise shared network storage to enable upload of NextSeq BCL files and download results output files.The AVENIO Connect Software and FoundationOne® Analysis Platform are required and available from Roche.The AVENIO Connect Software User Assistance is available to provide guidance on the use of the software. Please consult your local Roche representative.

Unlocking genomic discovery with comprehensive solutions supporting a variety of NGS applications and workflows.

Benefits of sequencing solutions from Roche

Performance

High-performing and reliable solutions: Enabling confident genomic insights

Analytical performance is a key driver in the development and continual improvement of Roche sequencing solutions.

  • KAPA library prep and target enrichment reagents and AVENIO assays are carefully optimized to mitigate sample loss, limit bias, and maximize sequencing coverage uniformity and depth. This ensures the sensitivity and specificity required to discover, characterize, and confirm genetic variation with confidence—from both routine and challenging sample types.
  • The walk-away AVENIO Edge System* and third-party automation solutions produce NGS libraries of similar or better quality than those prepared manually.1
  • The AXELIOS 1 platform, powered by innovative SBX sequencing technology, is designed to deliver raw read accuracy intended to meet the requirements of the most stringent research applications.2
  • Roche-developed secondary and tertiary data analysis tools, such as the  SBX optimized open source (XOOS) analysis tools, FoundationOne® Analysis Platform, and  navify Mutation Profiler,** are meticulously developed and curated to ensure accurate and reliable variant calls and actionable insights.
Flexibility

Tunable solutions: Powering your diverse application needs

Our NGS product portfolio offers flexible product configurations and workflow parameters to support the scale of your project, the intricacies of your experimental design, and operational requirements or constraints.

  • KAPA library prep and target enrichment reagents are available in a variety of product configurations and pack sizes to support manual and automated sample prep, minimize plastic waste, and reduce per-sample cost. Customized content, packaging, and documentation are available to support your project goals and business operations.
  • The AVENIO Edge System* and third-party automated sample prep solutions offer tunable parameters to support different batch sizes, fragment lengths, and other workflow parameters.
  • AVENIO oncology assays offer a versatile framework for both tumor tissue and ctDNA analysis, supporting research applications from board genomic profiling to targeted profiling with various panel sizes.
  • The AXELIOS 1 platform aims to offer unique operational flexibility, selectable read-lengths, and accelerated sequencing run times that scale proportionately with output.
Efficiency

Engineered for efficiency: Accelerate your journey from sample to insight

While the power of NGS excels at interrogating complex biological questions, this often comes with a trade-off in turnaround time compared to non-NGS assays. At Roche, we continuously strive to reduce the time from sample to result by streamlining our technology, workflows, chemistries, and analysis algorithms.

  • KAPA and AVENIO workflows, manual or automated, are continually refined to minimize reagent additions, manipulations, and incubation times, ensuring that user intervention is reduced without compromising performance.
  • Workflows are designed and optimized for standard workdays, and contain quality control (QC) and safe stopping points to support high success rates and optimal utilization of lab resources.
  • SBX technology is capable of enabling high efficiency with multiple sequencing methods and selectable read lengths on a single platform, reusable sensor modules, and accelerated run times. In a proof of concept experiment, SBX-Fast workflow allows for completion of a DNA sequencing run from sample to VCF in ~5 hours.1
  • Secondary and tertiary analysis tools are cloud-based and intuitive to use.
Quality

Unwavering excellence: Roche’s quality promise

Roche quality standards encompass a commitment to ethical conduct, patient safety, environmental protection, and high performance across its global operations. 

  • We manage quality through a robust global quality management system (QMS) that ensures compliance with strict internal policies and standards, as well as external guidelines and regulations.
  • We are committed to continuous improvement and a culture of compliance to ensure supply chain integrity and sustainability.
  • Quality processes and metrics are developed and validated during product development. Every instrument and batch of reagents undergo rigorous quality control (QC) testing to ensure reliable performance and lot-to-lot consistency. 
Blue radial graphic with fast-moving ATCG patterns symbolizing high-speed genomic analysis for the Sequencing by Expansion SBX platform

Next-generation sequencing platform

Roche’s NGS platform uses the novel and proprietary sequencing by expansion (SBX) technology, designed for high flexibility, throughput, and accuracy.

Contact us

Do you have questions about our products or services? We’re here to help. Contact a Roche representative in your region.

Related health topics

AVENIO assays and KAPA products are for Research Use Only. Not for use in diagnostic procedures.

*The AVENIO Edge System is a Class 1 US IVD and a Class A CE IVD (under IVDR) and is intended for downstream diagnostic applications. For the EU, Roche is collaborating with Platomics to enable laboratories to help automate document generation on Platomics’ multi-stakeholder platform for workflows incorporating the AVENIO Edge System. Reagents and kits mentioned are for Research Use Only. They are not intended for diagnostic procedures. The AVENIO Edge System can be used for Research Use Only (RUO) workflows.

**navify® Mutation Profiler is CE-IVD in EU. This product is For Research Use Only, not for use in diagnostic procedures in the US and other countries when used with the AVENIO Tumor Tissue CGP Kits. Tertiary analysis with navify® Mutation Profiler is not part of the AVENIO Tumor Tissue CGP Automated Kit and may be purchased as an add on.

†The AXELIOS 1 sequencing platform and sequencing by expansion (SBX) technology are in development and not commercially available. The content of this material reflects current research study results and/or design goals. The AXELIOS 1 sequencing platform based on SBX technology will be launched for Research Use Only. Not for use in diagnostic procedures.

 

References

  1. F. Hoffmann-La Roche Ltd. Data on file.
  2. Kokoris M, et al. Sequencing by Expansion (SBX) – a novel, high-throughput single-molecule sequencing technology. bioRxiv. 2025 Mar 15. doi: https://doi.org/10.1101/2025.02.19.639056;