NGS target enrichment solutions

Efficient NGS target enrichment with Roche’s KAPA HyperCap and KAPA HyperPETE workflows—flexible solutions for focused or broad panels, and custom designs.

A technician pipettes samples into a 96 well plate while performing NGS target enrichment methods

Efficient target enrichment strategies for next-generation sequencing (NGS)

Solution

Comprehensive NGS target enrichment solutions

Our portfolio includes two distinct NGS target enrichment technologies to meet different research needs:

The KAPA HyperCap Workflow is a hybrid capture-based method that is ideal for larger panels and comprehensive variant detection.

The KAPA HyperPETE Workflow uses primer extension-based enrichment (PETE), and is specifically designed for smaller, focused panels and ultra-low inputs like cfDNA. The KAPA HyperPETE workflow delivers the high performance of hybrid capture enrichment—including superior uniformity and on-target rates—with the ease and speed of an amplicon-like workflow.

These comprehensive solutions are part of an integrated workflow with high-quality probes or primers and streamlined KAPA Library Prep Kits. Our portfolio offers the right solution for your targeted sequencing project:

  • Exome probes: Maximize sequencing efficiency with whole-exome solutions tuned for broad and relevant database coverage

  • Catalog panels: Get to work faster with fixed gene panels readily available from stock

  • Design Share panels: Gain confidence with expert-designed panels developed in collaboration with leading researchers

  • Custom probes: Create your tailored solution with probes for custom-defined regions of any human or non-human genome

Value

Focus on what matters: The power of NGS target enrichment

NGS target enrichment focuses sequencing resources on specific genomic regions using methods like hybrid capture or amplicon-based approaches. By eliminating regions not relevant to a particular study, this technique offers powerful advantages over whole-genome sequencing by dramatically reducing costs and the computational burden of analysis.1

This focused approach enables far greater sequencing depth of selected regions, which increases statistical power and prevents false data interpretations—especially in samples with limited input. The resulting sensitivity is invaluable for detecting low-frequency somatic mutations in heterogeneous samples, identifying relevant variants, and enabling cost-effective gene expression studies in oncology research applications. Its power and flexibility have established NGS target enrichment as a cornerstone of modern genomics research and translational medicine.

Vision

Driving deeper insights and advancements in human health research

At Roche, we empower researchers with comprehensive and innovative target enrichment solutions for NGS, from extensive catalog panels to fully customized designs. We help you overcome the toughest sequencing challenges, delivering precise and sensitive results from low-input samples and difficult-to-capture genomic targets. Our goal is to accelerate your success, enabling a deeper understanding of underlying mechanisms, improving clinical research capabilities, and unlocking the potential of new applications.

Enrich target regions of interest for successful next-generation sequencing.

Focus on your regions of interest with hassle-free NGS custom panel design.

 

Benefits of NGS target enrichment solutions from Roche

Design expertise

Renowned design expertise

Harness decades of probe design expertise to get the focused insights you need. Our versatile NGS target enrichment solutions save valuable time and sequencing resources, whether you're analyzing the entire exome, specific regions, or a subset of the transcriptome.

  • Get actionable insights and confident conclusions faster with KAPA HyperExome V2 Probes

  • Save valuable time and resources with Design Share panels, which provide expertly pre-designed content for key research applications

  • Design new panels with confidence. Our HyperDesign Tool provides a simple, proven algorithm and expert support to ensure you get the results you need

Broad coverage

Broad coverage of key genomic databases

Roche's NGS target enrichment solutions provide exceptionally competitive and superior coverage across key genomic databases. Our meticulously designed solutions ensure robust interrogation of critical genomic regions, minimizing dropouts and maximizing the depth of sequencing data. This comprehensive coverage translates directly to increased confidence in variant calling results, enabling more reliable downstream analysis and accelerating research insights. Highlighted here:

  • KAPA HyperExome V2 Probes deliver superior coverage of the recent versions of key genomic databases

Integrated workflows

Integrated workflow solutions for both target enrichment technologies

Roche offers both hybridization-based and primer extension NGS target enrichment solutions that are part of a fully integrated and validated workflow. Our solutions incorporate high-quality, expertly designed probes or primers, as well as the streamlined KAPA library prep kits, ensuring all components work together seamlessly to maximize performance and minimize technical variability.

This comprehensive approach enables the focusing of sequencing resources for targeted resequencing applications, delivering the high uniformity and sensitivity critical for research in human genetic disease and oncology. The workflows include:

  • KAPA HyperCap Workflow

  • KAPA HyperPETE Workflow

KAPA HyperCap, KAPA HyperPETE and amplicon-based workflow considerations and comparisons

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KAPA HyperCap, KAPA HyperPETE and amplicon-based workflow considerations and comparisons

 

KAPA HyperCap Workflow

KAPA HyperPETE Workflow

Amplicon-based workflow

Ease of use

  • Easy to use and automate

  • Streamlined and optimized workflow with low hands-on-time

  • Easy to use and automate

  • Get your answers faster, without compromising on performance

  • Streamlined 1-day workflow with short incubations and reduced hands-on time

  • Easy to use and automate

  • Fastest workflow

Performance

  • High sequencing efficiency

  • Detects all major mutation classes

  • Highest sequencing efficiency in small panels

  • Detects all major mutation classes

  • Lower uniformity

  • Lower performance in CNV detection

  • Impossible to detect unknown fusion partners

  • Good performance on SNVs / Indels and known fusions

Technology

Hybridization-based capture

Primer Extension Target Enrichment

PCR amplification

Turnaround time

1.5 days

Single day

Single shift

Panel size

Up to whole exome and beyond

Up to 250 Kb

Up to a few megabases

Applications

  • Hereditary genetics research

  • Hereditary and somatic oncology research

  • Somatic oncology research

  • RNA fusions (known + novel fusion partners)

  • Somatic oncology research
  • Hereditary genetics RNA fusions (known only)

Secondary analysis support

  • Germline and somatic variants secondary analysis with open source bioinformatic tools

  • Germline and somatic variants secondary analysis with open source bioinformatic tools

 

Various vendor offerings

Contact us

Do you have questions about our products or services? We’re here to help. Contact a Roche representative in your region.

KAPA products are for Research Use Only. Not for use in diagnostics procedures.

References

  1. Kozarewa et al. Overview of target enrichment strategies. Curr Protoc Mol Biol. 2015; 112:7.21.1-7.21.23.